PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC3740_p3
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 204aa    MW: 23067.7 Da    PI: 8.9812
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC3740_p3genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.52.1e-12250455
                HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH  4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                +h ++Er+RR+++N+ +  Lr+l P     + k+ + a+i   A+e+Ik++q
  RrC3740_p3  2 SHIAVERNRRRQMNEHLKSLRSLTPCF---YIKRGDQASIIGGAIEFIKEMQ 50
                89************************9...9*******************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000837.72E-12154No hitNo description
SuperFamilySSF474591.2E-15166IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.729149IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.2E-12261IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-9250IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.7E-11455IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009913Biological Processepidermal cell differentiation
GO:0010374Biological Processstomatal complex development
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MSHIAVERNR RRQMNEHLKS LRSLTPCFYI KRGDQASIIG GAIEFIKEMQ QLVQVLESKK  60
RRKTLNRPSF PCDHQTLEPS LLAAATNATT RMPFSQIENV MTTSTFKEVG ACSNSHHANV  120
EAKISGSNVV LRVVSWRIEG QLVRIISVLE KLSFQVLHLN ISSMEESVLY FFVVKIGLEC  180
HLSLEELTLE VQKSFVPEAI VSTN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15862KKRRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009129643.11e-138PREDICTED: transcription factor MUTE
SwissprotQ9M8K61e-130MUTE_ARATH; Transcription factor MUTE
TrEMBLA0A078GHS91e-138A0A078GHS9_BRANA; BnaA05g31160D protein
TrEMBLM4DW811e-138M4DW81_BRARP; Uncharacterized protein
STRINGBra020775.1-P1e-137(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM70732640
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06120.11e-131bHLH family protein